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LOC_001G2JW.1
Download
Download FASTA
Download metadata TSV
Sweden/LOC_001G2JW.1/2025-09-13
R. Dyrdak,
G. Naver,
S. Broddesson &
L. Andersson-Li
Karolinska University Hospital, Department of Clinical Microbiology
Sample details
Collection date
2025-09-13
Earliest release date
2026-09-01
Sampling location
Sweden
Isolate name
SWE/EVD68/004/2025
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2026-09-01
NCBI update date
2026-09-01
INSDC accession
PZ672963.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ672963.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-10 14:41:53 UTC
Date released
2026-09-10 14:51:48 UTC
Clade
Clade EV-D68
A2/D
Genotype
Genotype
EV-D68
Alignment and QC
Total SNPs
446
Total inserted nucs
6
Total deleted nucs
26
Total unknown nucs
1824
Length
7053 (71.3%)
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
C
203
T
A
232
T
T
262
C
G
263
A
C
268
T
G
272
T
G
292
A
T
334
C
A
335
T
G
435
A
C
471
T
A
496
G
C
518
T
A
586
T
T
615
C
G
616
A
T
620
A
G
639
A
Show more
Deletions
680-702, 2806-2808
Insertions
ins_3303:ATCCGG
Amino acid substitutions
Substitutions called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
V
31
I
2A:
V
37
I
2A:
R
67
K
2A:
I
71
V
2A:
G
126
D
3C
3C:
V
30
I
3C:
Y
31
H
3C:
V
52
I
3C:
R
55
K
3C:
C
93
Y
3D
3D:
M
11
V
3D:
V
29
I
3D:
V
88
T
3D:
N
95
S
3D:
E
101
D
3D:
R
132
K
3D:
K
139
R
3D:
I
212
V
3D:
I
261
V
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
H
332
Y
3D:
V
349
L
3D:
I
360
V
VP1
VP1:
S
1
L
VP1:
N
2
E
VP1:
G
6
E
VP1:
V
13
I
VP1:
T
46
S
VP1:
G
76
S
VP1:
K
84
R
VP1:
A
92
T
VP1:
S
95
G
VP1:
A
96
E
VP1:
G
97
R
VP1:
T
98
I
VP1:
H
99
D
VP1:
F
103
Y
VP1:
D
144
N
VP1:
M
148
T
VP1:
K
168
E
VP1:
E
169
K
Show more
VP2
VP2:
S
59
A
VP2:
R
67
K
VP2:
S
73
A
VP2:
N
74
E
VP2:
T
76
K
VP2:
D
136
N
VP2:
R
151
E
VP2:
I
167
L
VP2:
V
195
A
VP2:
M
222
V
VP2:
V
225
M
VP2:
T
247
A
VP3
VP3:
I
40
V
VP3:
M
46
V
VP3:
D
59
E
VP3:
N
62
D
VP3:
E
65
Q
VP3:
R
68
K
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
I
153
V
VP3:
I
163
V
VP3:
S
180
N
VP3:
S
204
N
VP3:
D
208
N
VP3:
I
216
V
Deletions
VP1
VP1:140
Insertions
VP1
ins_VP1:306:RL
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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